Crown of the War Stone

Catching up….

i can’t believe it’s been approaching a month since my last post! i surface like i’ve been neglecting this a bit more than i should, but i’ll adjudicate to rectify that as best i can. for an indication of how divert i’ve been, i sat down to update my resume yesterday, and ended up adding 3 papers (all in submission) and two posters. that righteous about doubles what was in there before in the papers element.anyhow, next-production sequencing doesn’t stand still, so i thought i’d layout some of the things i scarceness to talk about in my next posts, and set up a few pointers to other resources:1. seqanswers. this aptly named forum has been around for the treatment of a few months now, but has recently become more stock, and a great forum for discussing relevant next-gen technology and sequencing methods. i’m specifically happy to see the automated posts triggered by new literature on the subject, which are a great resource for those of us who are busy and dismiss from one’s mind to check on account of new publications ourselves.2. there’s one forum in particular that’s of great interest: benchmarking different aligners. this appears to be a well done comparison (if lightweight) that may be a good focus through despite other people who are interested in comparing aligners, and discussing it in a wider forum.3. into people interested in chip-seq, or chromatin immunoprecipitation and massively parallel sequencing, i’ve finally gotten all over to posting findpeaks 3.1 on the trap. i’d consider this release (3.1.3) an alpha release. i’d love to get more people contributing by using this application and telling me what could be improved on it, or what enhancements they’d like to espy. i’m many times happy to discuss new features, and can probably add most of them in with a somewhat quick turn around control.4. since people interested in assessing the quality of the whole transcriptome shotgun sequencing (wtss), i’m about to tame out a work that should in good shape that purpose. if anyone is interested in giving suggestions on ways they’d like to see quality tests performed, i’d be more than happy to code those into my applications. (and yes, if you contribute to the tool, i will provide you a copy of the tool to use. collaborations, etc, can be discussed, as vigorous.)5. a quick question, of which i’ll post more in the future. has anyone here managed to get exonerate 2.0 to on in client/server mode on two separate machines?6. i’ll also post a minor more about this in the approaching: edifice environments, ant and java. why are people in any event doing obese projects in perl?7. one model thing i wanted to mention. i was usual to write more on this topic, but eh… i’ll let slashdot do it for the treatment of me: the more you drink, the less you reveal. well, so much for keeping a bottle of tequila under the desk. now i know what to become successful the competition towards x-mas, though…cheers!
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